PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008220724.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 567aa    MW: 63292.2 Da    PI: 8.6661
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008220724.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.32.2e-1622107899
                     -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     s  l+s rl +p +f+ +++g +  s  ++l  +sg+ W+v l   +k g  ++  GW  Fv+++ ++ gDf++F++dg+ +f  +v +f++
  XP_008220724.1  22 SADLSSERLKIPERFMIHMEGRT--SGLVSLFGPSGNAWNVDL--IQKNGDLFFHHGWPAFVRDHFVECGDFLIFRYDGELCF--TVLIFDQ 107
                     66788999********9998884..458***************..77778899*************************99999..9999986 PP

2B342.61.1e-132473271394
                     TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     s  l +p kf  +h   ++++++l+l + +g+sW+v+    ++   +++l +GW  Fv+ n++k gD+++F+l+++ ef+ +v
  XP_008220724.1 247 SYTLNIPCKFSVAHL--PNCKVKLVLHNWKGESWTVNSVPsTRVHTSHTLCGGWMAFVRYNDIKLGDICIFELVHECEFRVHV 327
                     556899****99996..45999***************9445555667999*************************99996665 PP

3B347.62.9e-15456547296
                     EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                     +k++++ +   s  l +p +f +eh  +     +++++l++++g+ W+v+   + k++  +++ +GW  Fv+ n+++ gD+++F+l+g+  +e+ 
  XP_008220724.1 456 VKIMKKFNICGSYTLKIPYQFSTEHlpN----YKTEIVLRNSKGECWTVNSVPDSKGRVvHTFCGGWMAFVRGNDVNIGDICIFELVGK--REMQ 544
                     5666555666667899*********533....3468***************5544444379999*********************9984..4455 PP

                     EEE CS
              B3  94 vkv 96 
                     v++
  XP_008220724.1 545 VHI 547
                     655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.8E-2210110IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-2211110IPR015300DNA-binding pseudobarrel domain
CDDcd100171.43E-1715106No hitNo description
PROSITE profilePS5086313.66215108IPR003340B3 DNA binding domain
SMARTSM010198.3E-1217108IPR003340B3 DNA binding domain
PfamPF023625.3E-1422107IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.0E-22226327IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-23228327IPR015300DNA-binding pseudobarrel domain
CDDcd100176.15E-17233327No hitNo description
PROSITE profilePS5086312.534235331IPR003340B3 DNA binding domain
SMARTSM010196.6E-9235331IPR003340B3 DNA binding domain
PfamPF023621.8E-10241327IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-22447548IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.08E-22448549IPR015300DNA-binding pseudobarrel domain
CDDcd100173.24E-19453547No hitNo description
PfamPF023621.2E-12455547IPR003340B3 DNA binding domain
SMARTSM010191.2E-10455553IPR003340B3 DNA binding domain
PROSITE profilePS5086312.59455551IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MAEEAQKETS NARRPHFFAF YSADLSSERL KIPERFMIHM EGRTSGLVSL FGPSGNAWNV  60
DLIQKNGDLF FHHGWPAFVR DHFVECGDFL IFRYDGELCF TVLIFDQSAC EKEAAFHSEC  120
GQDSSNFEKY MGRKRGREEA ASSGKLVDGV AKKMRDSSSE EGCGHEGVMC EEATCSKEIK  180
RAEKPGLDIV LCKANASIQN TCGKGDGLNV NGRVCVQMSS AHEIAQSFSS SNPYFVRIMK  240
SFNISGSYTL NIPCKFSVAH LPNCKVKLVL HNWKGESWTV NSVPSTRVHT SHTLCGGWMA  300
FVRYNDIKLG DICIFELVHE CEFRVHVQSG ETSSWLSAEL ALPSIKTFKS LSKIMTGNSP  360
KVHSKSIRKI EKADKIAPKK FQEAAFTNDA RKYGSTSKSL TKVSLSQSKA ANKKLVNHRK  420
KIVEDELNPG SSLRMRLTLD EERAARSFTS CFPSFVKIMK KFNICGSYTL KIPYQFSTEH  480
LPNYKTEIVL RNSKGECWTV NSVPDSKGRV VHTFCGGWMA FVRGNDVNIG DICIFELVGK  540
REMQVHISGI GKKGFDHQDG EATSNAV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008220724.10.0PREDICTED: B3 domain-containing protein Os01g0723500-like
TrEMBLM5XC500.0M5XC50_PRUPE; Uncharacterized protein
STRINGGLYMA14G08641.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114703238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-20B3 family protein